From biomass to sedimentary organic matter (SOM) and ultimately hydrocarbon generation, a key hypothesis posits that prokaryotes (e.g., bacteria and archaea) play a crucial role in both biomass production and the diagenetic alteration of buried organic matter, significantly influencing the formation of SOM and subsequent hydrocarbon generation. For example, Lea-Smith et al. (2015) demonstrated, based on studies of Prochlorococcus and Synechococcus—two of the most abundant cyanobacteria in modern oceans—that cyanobacterial-derived alkanes (primarily C15 and C17) contribute a global ocean hydrocarbon yield of ∼ 308–771 million tons annually. The thick cell walls of cyanobacteria contain degradation-resistant, algaenan-like biopolymers, which facilitate their preservation and conversion into kerogen. Further evidence comes from ancient sediments: in Mesoproterozoic oceans, where prokaryotes such as cyanobacteria dominated primary productivity, hydrocarbon source rocks like the 1.38-billion-year-old Xiamaling Formation in North China have been identified (Wang et al., 2023). However, conflicting data complicate this interpretation, based on discrepancies between prokaryotic biomarker δ¹³C signatures and bulk organic carbon isotopic trends, and supported that prokaryotes can only be a minor constituent of SOM, and did not contribute much to eventual hydrocarbon generation (Sinninghe Damsté and Schouten, 1997). This raises a fundamental scientific issue: Are prokaryotes major contributors to SOM, or do they primarily act as secondary modifiers of organic matter? Moreover, does prokaryotic organic matter possess significant hydrocarbon potential? These questions represent a pivotal research gap in organic biogeochemistry and petroleum geology. However, resolving them has been hindered by methodological challenges in microbial detection and biomarker preservation.
The Junggar Basin, a large superimposed petroliferous basin in northwestern China, hosts high-quality hydrocarbon source rocks within the Late Paleozoic Lucaogou Formation (~290 Ma). These saline lacustrine deposits exhibit exceptionally high total organic carbon (TOC) contents (up to ~40%) and provide compelling evidence of intense microbial methane cycling, including putative methanogenic archaea fossils, carbonates with δ¹³C values exceeding +5‰, and regular hopanes with δ¹³C as low as −63‰ (Sun et al., 2022). These features make the Lucaogou Formation an ideal case study for investigating prokaryotic influences on SOM formation. Our investigation shows that methane prokaryotes co-evolved with environmental and biological variations. Mudstone intervals with the strongest methane microbial activities (3β-MeHI = 10.2±1.2 %) correspond to a stratified water column, relative to the relatively tight intervals (3β-MeHI = 6.0±0.8 %). These strata also exhibit
Tasmanite bloom and contain abundant carbonaceous microfossils resembling methanogenic archaea within fossilized
Tasmanite cysts. Notably, microbial methane activities showed no direct and remarkable correlation with bulk TOC abundance but was associated with enhanced hydrocarbon potential (S₁ + S₂ = 47.4 ± 37.6 mg HC/g rock), oil-prone kerogen (HI = 644 ± 191 mg HC/g TOC; Type I–II), and higher hydrocarbon-generating capacity (PG/TOC = 724 ± 226 mg HC/g TOC), indicating a significant contribution to the oil-generating organic matter. The mechanism is proposed that methanogens improve the kerogen type of the hydrocarbon source rock by modifying the degradation-resistant organic matter and forming less branched high-abundance aliphatic hydrocarbons, which are more oil-prone. We conclude that prokaryotic enhancement of SOM formation likely depends on depositional conditions; stratified water columns—with oxic surface layers and anoxic bottom waters—appear particularly favorable for this process and mechanism.